Index

A

append_ligand() (in module gromacs_extra.append_ligand)

AppendLigand (class in gromacs_extra.append_ligand)

E

Editconf (class in gromacs.editconf)

editconf() (in module gromacs.editconf)

G

Genion (class in gromacs.genion) genion() (in module gromacs.genion) Genrestr (class in gromacs.genrestr) genrestr() (in module gromacs.genrestr) Gmxselect (class in gromacs.gmxselect) gmxselect() (in module gromacs.gmxselect) gromacs.editconf module gromacs.genion module gromacs.genrestr module gromacs.gmxselect module gromacs.grompp module gromacs.grompp_mdrun module

gromacs.make_ndx module gromacs.mdrun module gromacs.pdb2gmx module gromacs.solvate module gromacs_extra.append_ligand module gromacs_extra.ndx2resttop module Grompp (class in gromacs.grompp) grompp() (in module gromacs.grompp) grompp_mdrun() (in module gromacs.grompp_mdrun) GromppMdrun (class in gromacs.grompp_mdrun)

L

launch() (gromacs.editconf.Editconf method) (gromacs.genion.Genion method) (gromacs.genrestr.Genrestr method) (gromacs.gmxselect.Gmxselect method) (gromacs.grompp.Grompp method) (gromacs.grompp_mdrun.GromppMdrun method) (gromacs.make_ndx.MakeNdx method) (gromacs.mdrun.Mdrun method) (gromacs.pdb2gmx.Pdb2gmx method) (gromacs.solvate.Solvate method) (gromacs_extra.append_ligand.AppendLigand method) (gromacs_extra.ndx2resttop.Ndx2resttop method)

M

main() (in module gromacs.editconf) (in module gromacs.genion) (in module gromacs.genrestr) (in module gromacs.gmxselect) (in module gromacs.grompp) (in module gromacs.grompp_mdrun) (in module gromacs.make_ndx) (in module gromacs.mdrun) (in module gromacs.pdb2gmx) (in module gromacs.solvate) (in module gromacs_extra.append_ligand) (in module gromacs_extra.ndx2resttop) make_ndx() (in module gromacs.make_ndx) MakeNdx (class in gromacs.make_ndx)

Mdrun (class in gromacs.mdrun) mdrun() (in module gromacs.mdrun) module gromacs.editconf gromacs.genion gromacs.genrestr gromacs.gmxselect gromacs.grompp gromacs.grompp_mdrun gromacs.make_ndx gromacs.mdrun gromacs.pdb2gmx gromacs.solvate gromacs_extra.append_ligand gromacs_extra.ndx2resttop

N

Ndx2resttop (class in gromacs_extra.ndx2resttop)

ndx2resttop() (in module gromacs_extra.ndx2resttop)

P

Pdb2gmx (class in gromacs.pdb2gmx)

pdb2gmx() (in module gromacs.pdb2gmx)

S

Solvate (class in gromacs.solvate)

solvate() (in module gromacs.solvate)