Index

A

append_ligand() (in module gromacs_extra.append_ligand)

AppendLigand (class in gromacs_extra.append_ligand)

E

Editconf (class in gromacs.editconf)

editconf() (in module gromacs.editconf)

G

Genion (class in gromacs.genion) genion() (in module gromacs.genion) Genrestr (class in gromacs.genrestr) genrestr() (in module gromacs.genrestr) Gmxselect (class in gromacs.gmxselect) gmxselect() (in module gromacs.gmxselect) gromacs.editconf (module) gromacs.genion (module) gromacs.genrestr (module) gromacs.gmxselect (module) gromacs.grompp (module)

gromacs.grompp_mdrun (module) gromacs.make_ndx (module) gromacs.mdrun (module) gromacs.pdb2gmx (module) gromacs.solvate (module) gromacs_extra.append_ligand (module) gromacs_extra.ndx2resttop (module) Grompp (class in gromacs.grompp) grompp() (in module gromacs.grompp) grompp_mdrun() (in module gromacs.grompp_mdrun) GromppMdrun (class in gromacs.grompp_mdrun)

L

launch() (gromacs.editconf.Editconf method) (gromacs.genion.Genion method) (gromacs.genrestr.Genrestr method) (gromacs.gmxselect.Gmxselect method) (gromacs.grompp.Grompp method) (gromacs.grompp_mdrun.GromppMdrun method) (gromacs.make_ndx.MakeNdx method) (gromacs.mdrun.Mdrun method) (gromacs.pdb2gmx.Pdb2gmx method) (gromacs.solvate.Solvate method) (gromacs_extra.append_ligand.AppendLigand method) (gromacs_extra.ndx2resttop.Ndx2resttop method)

M

main() (in module gromacs.editconf) (in module gromacs.genion) (in module gromacs.genrestr) (in module gromacs.gmxselect) (in module gromacs.grompp) (in module gromacs.grompp_mdrun) (in module gromacs.make_ndx) (in module gromacs.mdrun) (in module gromacs.pdb2gmx) (in module gromacs.solvate) (in module gromacs_extra.append_ligand) (in module gromacs_extra.ndx2resttop)

make_ndx() (in module gromacs.make_ndx) MakeNdx (class in gromacs.make_ndx) Mdrun (class in gromacs.mdrun) mdrun() (in module gromacs.mdrun)

N

Ndx2resttop (class in gromacs_extra.ndx2resttop)

ndx2resttop() (in module gromacs_extra.ndx2resttop)

P

Pdb2gmx (class in gromacs.pdb2gmx)

pdb2gmx() (in module gromacs.pdb2gmx)

S

Solvate (class in gromacs.solvate)

solvate() (in module gromacs.solvate)